I am an advocate of writing checks with felt-tip pens, for the reasons that Bonnie mentioned. another advantage to using felt-tips is that the ink actually 'soaks in' to the paper, rather than just sittting on it like ballpoint ink does.
In addition to the tips mentioned here, if you have concerns that your checks may be altered, I also suggest that you ask your bank if they offer positive pay service. In a nutshell, positive pay is a service through which you would give the bank a file which indicates the checks you've written (at least by number, date, and amount,) and all checks clearing against your account are compared to this file. If something doesn't match, then the positive pay system automatically rejects the item for additional verification.
If this is not available to you, use the bank's telephone or online banking to verify the checks that have cleared your account. By doing this daily, you will at least be able to pick up on altered amounts (and altered payees, if the online banking includes check images) and notify the bank promptly.
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It's hard for an egg to become a bird. It's harder for an egg to learn to fly. C.S. Lewis